BioBIKE
Gene/protein information functions
ALL-ORTHOLOGS-OF Returns the set of proteins common amongst all available organisms
COG-ID-OF
Returns gene's ID number of COG classification (if any)
CONTIG-OF
Returns gene's contig or replicon
DESCRIPTION-OF Returns description of gene from best available source
ENCODES-PROTEIN? Returns True if given gene encodes protein, otherwise False
GENE-DESCRIBED-BY
GENES-DESCRIBED-BY
Returns gene(s) with the given specifier in some information field
GENE-DOWNSTREAM-OF
GENES-DOWNSTREAM-OF
Returns gene downstream of given gene
GENE-LEFT-OF
GENES-LEFT-OF
Returns gene to left of given gene on genetic map
GENE-NAMED
GENES-NAMED
GENE-OF
GENES-OF
Returns gene(s) (the frame(s)) corresponding to the given protein(s)
GENE-RIGHT-OF
GENES-RIGHT-OF
Returns gene to right of given gene on genetic map
GENE-UPSTREAM-OF
GENES-UPSTREAM-OF
Returns gene upstream of given gene
GO-CATEGORY-OF Returns gene's GO category, if one has been assigned
LENGTH-OF
LENGTHS-OF
Returns length[s] of gene, protein, contig, replicon, organism, or string[s]
MW-OF
MWs-OF
Returns predicted molecular weight[s] of protein[s]
ORTHOLOG-OF
ORTHOLOGS-OF
Returns gene(s) or protein(s) orthologous to given gene(s) or protein(s) in specified organism(s)
PROTEIN-NAMED
PROTEINS-NAMED
PROTEIN-OF
PROTEINS-OF
Returns the protein(s) (the frames)) corresponding to the given gene(s)
SEQUENCE-DOWNSTREAM-OF
SEQUENCES-DOWNSTREAM-OF
Returns sequence downstream of given gene
SEQUENCE-UPSTREAM-OF
SEQUENCES-UPSTREAM-OF
Returns sequence upstream of given gene
SEQUENCE-OF
SEQUENCES-OF
Returns the nucleotide or amino acid sequence[s] of gene/protein[s]