ALL-ORTHOLOGS-OF Returns the set of proteins common amongst all available organisms COG-ID-OF Returns gene's ID number of COG classification (if any) CONTIG-OF Returns gene's contig or replicon DESCRIPTION-OF Returns description of gene from best available source ENCODES-PROTEIN? Returns True if given gene encodes protein, otherwise False GENE-DESCRIBED-BY
GENES-DESCRIBED-BYReturns gene(s) with the given specifier in some information field GENE-DOWNSTREAM-OF
GENES-DOWNSTREAM-OFReturns gene downstream of given gene GENE-LEFT-OF
GENES-LEFT-OFReturns gene to left of given gene on genetic map GENE-NAMED
GENES-NAMED
GENE-OF
GENES-OFReturns gene(s) (the frame(s)) corresponding to the given protein(s) GENE-RIGHT-OF
GENES-RIGHT-OFReturns gene to right of given gene on genetic map GENE-UPSTREAM-OF
GENES-UPSTREAM-OFReturns gene upstream of given gene GO-CATEGORY-OF Returns gene's GO category, if one has been assigned LENGTH-OF
LENGTHS-OFReturns length[s] of gene, protein, contig, replicon, organism, or string[s] MW-OF
MWs-OFReturns predicted molecular weight[s] of protein[s] ORTHOLOG-OF
ORTHOLOGS-OFReturns gene(s) or protein(s) orthologous to given gene(s) or protein(s) in specified organism(s) PROTEIN-NAMED
PROTEINS-NAMED
PROTEIN-OF
PROTEINS-OFReturns the protein(s) (the frames)) corresponding to the given gene(s) SEQUENCE-DOWNSTREAM-OF
SEQUENCES-DOWNSTREAM-OFReturns sequence downstream of given gene SEQUENCE-UPSTREAM-OF
SEQUENCES-UPSTREAM-OFReturns sequence upstream of given gene SEQUENCE-OF
SEQUENCES-OFReturns the nucleotide or amino acid sequence[s] of gene/protein[s]