BioBIKE
(ALIGNMENT-OF sequence-list [options]

LINE-LENGTH number | 50
SEGMENT-LENGTH number | 10
SHOW-CONSENSUS TRUE | FALSE
TO-VARIABLE TRUE | FALSE
AS NAME | VALUE | ANY
IN organism
VERBOSE TRUE | FALSE
Example:
  (ALIGNMENT-OF (ALL-ORTHOLOGS-OF p-all4312))

          [Result is an amino-acid alignment of all orthologs of all4312 (including all4312 itself)]

Example:
  (ALIGNMENT-OF (ALL-ORTHOLOGS-OF all4312) LINE-LENGTH 60 SEGMENT-LENGTH 3)

          [Result is a nucleotide alignment of all orthologs of all4312 (including all4312 itself)
            Nucleotides are grouped in three's to make codons more evident]