|
LINE-LENGTH number | 50
SEGMENT-LENGTH number | 10 TO-VARIABLE TRUE | FALSE |
AS NAME | VALUE | ANY
IN organism VERBOSE TRUE | FALSE |
Example:
- Displays with coordinates a sequence, which may be:
* A string (e.g. "ATGACAGGG...")
* A name of a gene, protein, contig, or replicon
* A variable holding one of the above- Lists are not allowed (Try Alignment-of)
- The alignment is displayed with the specified line-length (default 50)
- Each line is shown as segments of segment-length (default 10).
This is useful, for example, to display codons in an open reading frame
(setting segment-length to 3).- If TO-VARIABLE is set to TRUE (default FALSE), then the sequence
is not displayed but is instead returned as a list of the form:
((name-of-sequence aligned-sequence)
(name-of-sequence aligned-sequence)
...
(DISPLAY-SEQUENCE-OF all4312 LINE-LENGTH 60 SEGMENT-LENGTH 3)
[Result is the nucleotide sequence of all4312. Nucleotides are grouped in three's to make
codons more evident]