Links - Bioinformatics and Bioengineering

-- -- Institutes/Organizations - - European Informatics Institute (EBI) US Food and Drug Administration (FDA) Institut Pasteur (English version) National Center for Biotechnology Information (NCBI) National Institutes of Health (NIH) National Science Foundation (NSF) The Institute for Genomic Research (TIGR) United States Department of Agriculture (USDA) Wellcome Trust Sanger Institute back to top -- -- Tools - - * links to documentation CLUSTALW - General purpose multiple sequence alignment CLUSTER - Cluster analysis FASTA3 - Comparative ORF Searching GALA - Genome Alignment and Annotation Database GLIMMER - ORF Prediction MacClade - Phylogenetic analysis MUMmer - Fast alignment of large-scale DNA and protein sequences PAUP 4.0 - Phylogenetic analysis PFAM - Protein families SIGNALP * - Find putative signal peptides SIMPLOT - Detects and analyzes mosaic sequences TIGRFAMS 1.0 - Protein families TREEVIEW - Graphically visualize Cluster results TOPPRED * - Identification of rotein membrane-spanning domains VISTA - Tools for comparative genomics back to top -- -- Resources - - University of Oklahoma's Advanced Center for Genome Technology Public Library of Science Microarrays.org Eisen Lab Dynamic Development Programs and scripts from OU Software from the Miller lab at PSU back to top